Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs34762142 chr3:48279814 A/AC 7.51E-5 519 39.53 41.27 19.13 KM Plot
KIRC rs34770320 chr6:25822134 GA/G 4.72E-5 525 42.2 30.92 4.1 KM Plot
KIRC rs34791189 chr6:26035806 G/A 3.96E-9 523 41.13 36.95 3.37 KM Plot
KIRC rs34793301 chr6:50859462 G/T 2.76E-5 522 39.53 43.55 15.3 KM Plot
KIRC rs34796805 chr6:25946633 AC/A 5.27E-5 523 42.4 30.52 6.8 KM Plot
KIRC rs34804024 chr6:25925496 C/T 2.0E-5 524 42.2 33.82 1.4 KM Plot
KIRC rs34822268 chr2:2598810 A/G 3.62E-5 523 39.23 45.13 8.35 KM Plot
KIRC rs34854900 chr6:2417551 C/T 9.62E-8 513 40 40.8 12.25 KM Plot
KIRC rs34885035 chr3:48297992 TG/T 7.14E-5 515 39.7 41.8 21.12 KM Plot
KIRC rs34901328 chr6:2436524 G/A 1.39E-7 520 40 37.77 5.47 KM Plot
KIRC rs34991381 chr6:130411803 T/C 1.65E-5 522 39.23 43.68 7.4 KM Plot
KIRC rs35002490 chr2:67670450 G/A 2.71E-7 520 39.7 39.53 2.03 KM Plot
KIRC rs35020302 chr8:12729781 G/C 4.37E-6 519 39.38 43.85 3.67 KM Plot
KIRC rs35046072 chr4:16220094 C/G 3.2E-6 527 38.95 46.8 8.22 KM Plot
KIRC rs35074774 chr10:81924403 A/G 2.14E-6 521 38.83 50.07 3.93 KM Plot